PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01587.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family E2F/DP
Protein Properties Length: 393aa    MW: 44090.4 Da    PI: 7.7236
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01587.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.73.9e-233398171
                  E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                             rk+ksL+ll+++fl+l+++   +++ l++++++L    v  +rRRiYDi+NVLe+++++++++kn+++wkg
  Rsa1.0_01587.1_g00004.1 33 RKQKSLGLLCTNFLALYNRHGIETIGLDDASSKL---GV--ERRRIYDIVNVLESVGVLTRRAKNQYTWKG 98
                             79*****************999************...**..****************************98 PP

2E2F_TDP79.43.3e-25168248171
                  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                              r+eksL+lltq+f+kl+ +s+++i++l+e+ak L+ +      +++k+RR+YDi+NVL+++nliek     ++k++++w g
  Rsa1.0_01587.1_g00004.1 168 RREKSLGLLTQNFIKLFICSQATIISLDEAAKLLLGDahntsIMRTKVRRLYDIANVLSSMNLIEKthtldSRKPAFKWLG 248
                              689**************************************999************************9999*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.0E-2629100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.9E-163296IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.5E-283398IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.8E-203498IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-23165249IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-32168248IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.3E-20170248IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.0E-14170249IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSDLPPEKPN MELSSSCSMP GSSSSSLHHS YSRKQKSLGL LCTNFLALYN RHGIETIGLD  60
DASSKLGVER RRIYDIVNVL ESVGVLTRRA KNQYTWKGFS AIPAALKELQ EEGAKDTFHR  120
FYTNENVKGS DDEDDEEESS SQPLSSSQTD TSKPASSPLP DSSKIDNRRE KSLGLLTQNF  180
IKLFICSQAT IISLDEAAKL LLGDAHNTSI MRTKVRRLYD IANVLSSMNL IEKTHTLDSR  240
KPAFKWLGYN GEPTFTLSSD LMMQAESKKR VFGTDLSNVS VKRSKTHDSA TERSLKMKQH  300
AIAESSYNRI FDALGSRGYE FGPFAPATGT YPTAPLEDNS KRAFDVQNLV SDYRPSYQNQ  360
VLKDLFGHYM DAWKSWYTEV TQKNPLPDTS QHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A4e-41322403228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150874.10.0PREDICTED: E2F transcription factor-like E2FE isoform X2
RefseqXP_013716161.10.0PREDICTED: E2F transcription factor-like E2FE
SwissprotQ8LSZ40.0E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLA0A078JH830.0A0A078JH83_BRANA; BnaC01g43490D protein
TrEMBLA0A078JSQ70.0A0A078JSQ7_BRANA; BnaCnng63530D protein (Fragment)
STRINGBra033767.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63042743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.20.0DP-E2F-like 1